File Formats for Tracking / VFX Pipline

I search the forum, but don’t found a good solution for my work.

What is the best workflow for Tracking in SynthEyes to work seamless with other Software in pipeline?

1) Footage is shot with the Canon 7D and records its HD movies as MOV files using AVC / H.264 compression. Some shots are from RED (Premiere have been able to work with the native REDCODE files (.R3D file extension).

2) CG Elements are Lightwave 9.6 render multipass as EXR

3) VFX Comp is in Fusion 6 (Windows, 64Bit)

4) Final Editing / Cut is in Adobe premiere pro (Windows, 64Bit)

I read that TIFF or PNG are best for tracking in SE? What Software is able to create as batch process to PNG or TIFF Sequence (MPEG Streamclip has Codex issues with MOV, Fusion 64 Bit can’t read MOV)?

What do others use as VFX Pipeline File Formats from 1) to 4) ?

Thanks

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